Pbsjob example.sh: Difference between revisions
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(New page: <nowiki> #! /usr/bin/zsh # # Example submission script for Torque or PBS (Portable Batch System) # # Usage: submit job with # qsub pbsjob_example.sh # #======================...) Â |
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# code |
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<nowiki> |
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# code 2 |
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#! /usr/bin/zsh |
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# |
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# Example submission script for Torque or PBS (Portable Batch System) |
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# |
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# Usage: submit job with |
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# qsub pbsjob_example.sh |
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# |
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#=========================================================================== |
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# PBS Job Parameters |
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# All parameters start with #PBS, so that the shell ingores them, |
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# but the PBS server reads them! |
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#=========================================================================== |
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# |
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# Job name (default is the name of pbs script file) |
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#PBS -N pbsjob_example |
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# |
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# Path/filename for standard output. Default: [job_name].o[job_id] |
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#PBS -o /tmp/pbsjob_example.out |
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# |
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# Path/filename for error output. Default: [job_name].e[job_id] |
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#PBS -e /tmp/pbsjob_example.err |
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# |
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# Queue name (e.g. Instant, Short, Medium, Long, Eternal). Default: Medium |
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#PBS -q Instant@stud.kip.uni-heidelberg.de |
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# |
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# Execution host (this option increases job standby time. Better remove it!!!) |
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#PBS -l host=mare05.atlas-farm.kip.uni-heidelberg.de |
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# |
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# Send e-mail at the end or abort: |
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#PBS -m ae |
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# |
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# Do not rerun this job if it fails |
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#PBS -r n |
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# |
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#=========================================================================== |
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# Unique Directory on the Scratch Disk |
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#=========================================================================== |
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# |
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# The unique directory for a job is created automatically |
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# in: /scratch/pbstmp.${PBS_JOBID} on the execution host. |
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# The subdirectory is removed after the job finished. |
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# The total amount of data in this directory must not exceed 20 GB! |
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# |
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cd /scratch/pbstmp.${PBS_JOBID} |
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# |
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#=========================================================================== |
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# Run the job |
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#=========================================================================== |
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# |
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# The output of the following commands will be appear in the job output file. |
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# |
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# get system name |
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# |
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uname -a |
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echo " " |
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echo "=====================================================================" |
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echo " " |
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# |
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# test basic shell environment variables |
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# |
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echo "HOSTNAME = " $HOSTNAME |
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echo "PBS_O_HOST = " $PBS_O_HOST |
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echo " " |
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echo "PATH = " $PATH |
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echo "PBS_O_PATH = " $PBS_O_PATH |
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echo " " |
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echo "LOGNAME = " $LOGNAME |
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echo "PBS_O_LOGNAME = " $PBS_O_LOGNAME |
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echo " " |
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echo "HOME = " $HOME |
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echo "PBS_O_HOME = " $PBS_O_HOME |
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echo " " |
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echo "SHELL = " $SHELL |
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echo "PBS_O_SHELL = " $PBS_O_SHELL |
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echo " " |
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echo "MAIL = " $MAIL |
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echo "PBS_O_MAIL = " $PBS_O_MAIL |
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echo " " |
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echo "PWD = " $PWD |
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echo "PBS_O_WORKDIR = " $PBS_O_WORKDIR |
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echo " " |
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echo "PBS_O_QUEUE = " $PBS_O_QUEUE |
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echo "PBS_QUEUE = " $PBS_QUEUE |
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echo " " |
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echo "PBS_JOBID = " $PBS_JOBID |
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echo "PBS_JOBNAME = " $PBS_JOBNAME |
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echo "PBS_NNODES = " $PBS_NNODES |
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echo "PBS_ENVIRONMENT = " $PBS_ENVIRONMENT |
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# |
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# now print all shell environment variable |
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# |
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echo " " |
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echo "=====================================================================" |
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echo " " |
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env |
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# |
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# test allowed system resources |
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# |
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echo " " |
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echo "=====================================================================" |
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echo " " |
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ulimit -a |
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# |
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# create some file aaa and copy it to my data directory |
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# |
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echo " " |
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echo "=====================================================================" |
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echo " " |
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echo "Hello World" > aaa |
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cp -pv aaa /data/stud/x01/users/${LOGNAME}/ |
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ls -al /data/stud/x01/users/${LOGNAME}/ |
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# |
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# run ATLAS Athena Hello World program |
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# |
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echo " " |
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echo "=====================================================================" |
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echo " " |
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source /atlas/athena/11.2.0/setup.sh |
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source /atlas/athena/11.2.0/dist/11.2.0/Control/AthenaRunTime/AthenaRunTime-00-00-06/cmt/setup.sh |
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athena.py AthExHelloWorld/HelloWorldOptions.py 2>&1 |
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# |
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</nowiki> |
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Revision as of 14:44, 20 February 2009
# code # code 2
